User: massimo.x.petretich

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Posts by massimo.x.petretich

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BioMart web service you're accessing may be down
... Hi, I am having problems displaying the BioMart databese: ``` listMarts() Request to BioMart web service failed. The BioMart web service you're accessing may be down. Check the following URL and see if this website is available: http://www.ensembl.org:80/biomart/martservice?type=registry&requ ...
annotation written 7 days ago by massimo.x.petretich0
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Comment: C: makeTxDbFromGFF, GTF columns not included in the TxDb object
... Thank you James for the reply, and for the clarification, it was really helpful, I'll switch to biomaRt. Best, Massimo ...
written 12 days ago by massimo.x.petretich0
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makeTxDbFromGFF, GTF columns not included in the TxDb object
... Dear Herve' or Marc, I would like to create a TxDb object for the Pig genome Sus Scrofa 11.1 from the Ensembl gtf annotation (ftp://ftp.ensembl.org/pub/release-96/gtf/sus_scrofa) that contains all the columns from the original gtf file. ``` > library(GenomicFeatures) > TxDb_ss11.1.96 <- ...
annotation written 13 days ago by massimo.x.petretich0 • updated 13 days ago by James W. MacDonald49k

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