User: saicharanp18

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Posts by saicharanp18

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Answer: A: ReactomePA and genelist
... Yes, you can use gene names from deseq results. Provided ReactomePA cannot map using gene names or symbols. you should use gene ID's. ...
written 9 weeks ago by saicharanp180
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Comment: C: Differential Expression Analysis for Single Population RNASeq in Deseq2
... The above results are using Zinbwave, LRT and sftype="poscount". Is there a way where we can do Outliers for a gene by IQR and perform comparisons. Is that really recommended in DE analysis. Thanks. ...
written 11 weeks ago by saicharanp180
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Comment: C: Differential Expression Analysis for Single Population RNASeq in Deseq2
... Hi, I am analyzing single population RNAseq data for differential expression analysis using DESeq2 and also tried Zinbwave integration which improved number of genes recovered and statistical significance. However i still see problems with outliers effects on comparisons like below Group A: 0 0 0 0 ...
written 11 weeks ago by saicharanp180
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Differential Expression Analysis for Single Population RNASeq in Deseq2
... Hi, I am working with Single population Rna seq data,each sample has around 500 cells laser captured from antibody stained unfixed tissue. I have too many zeros in the data set and there are some cases where only one sample in a group have zero counts , i think which is affecting my results and anal ...
normalization deseq2 written 3 months ago by saicharanp180 • updated 3 months ago by Michael Love24k

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