## User: Constantin Ahlmann-Eltze

Reputation:
10
Status:
New User
Location:
Germany/Heidelberg/EMBL
Website:
https://github.com/con...
const_ae
Last seen:
3 months, 4 weeks ago
Joined:
7 months, 1 week ago
Email:

#### Posts by Constantin Ahlmann-Eltze

<prev • 3 results • page 1 of 1 • next >
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... Ah, okay. Thanks for the clarification :) > I wanted to take the completed matrix, correct for the batch effect and then run a statistical test If the batch effect that you mentioned, is the one in the column of the design matrix, the best way to handle it is to include it in the linear model. ...
written 4 months ago by Constantin Ahlmann-Eltze10
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... Well, yes you can get the completed matrix using predict(fit, type = "response") The documenation for the predict function is here [https://const-ae.github.io/proDA/reference/predict-proDAFit-method.html][1] **But**, I think you should not do that and then run another statistical test on the ...
written 4 months ago by Constantin Ahlmann-Eltze10
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... Hi Haris, the problem that you are describing is exactly for what I developed proDA. To show how you can use the package, I will generate some synthetic data to show how to call proDA with the appropriate linear model. I assume that your design matrix dataframe is called design_matrix. ...
written 4 months ago by Constantin Ahlmann-Eltze10

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