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Posts by alice.checcucci
... The samples are 6 (3 for the wild type and 3 for the mutant). The sequencing depth is even across samples. > colSums(counts(ddsTxi))  5030644 3461589 5517470 5246512 1681959 4651938 > cbind(samples, colSums(counts(ddsTxi))) species colSums(counts(ddsTxi)) 1 2011 ...
... Hi, I am using DESeq2 for DEG analysis in my RNA-Seq experiment. I have 2 bacterial strains: one is the wild type and the other is a mutant (it lacks one plasmid). When I look for differentially expressed genes, plotting the results with MAplot I obtain a strange plot, which seems not to have the " ...
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