User: dbretta25

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dbretta250
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Posts by dbretta25

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Comment: C: Comparison of Comparisons with DESeq2
... Thanks Michael, I have read the interaction section of the vignette but I am having trouble taking that information/example and applying it to my design. Do you have input on whether the two results examples I provided are two ways of performing the same contrast (D - C)? And if they should then ...
written 6 months ago by dbretta250
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Comparison of Comparisons with DESeq2
... I have an experimental design with 4 groups, 6 replicates per group (1 control group "A", and 3 treatment groups "B", "C", and "D"). My design is ~ condition My code is as follows: dds <- DESeqDataSetFromMatrix(countData=my.counts, colData=coldata, design= ~ condition) dds <- estima ...
deseq2 comparison of comparisons compare two contrasts complex contrast written 6 months ago by dbretta250 • updated 6 months ago by Michael Love25k

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