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Comment: C: Convergence of betas, iterations arguments with nbinomialWaldTest
3.5 years ago Mozart ▴ 30
2
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2
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695
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Convergence of betas, iterations arguments with nbinomialWaldTest
deseq2
updated 3.5 years ago by 41k • written 3.5 years ago by ▴ 30
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1
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756
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SVA for visualisation purposes
sva svaseq surrogate variable analysis
updated 4.0 years ago by 65k • written 4.0 years ago by ▴ 30
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0
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16k
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Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
4.0 years ago Mozart ▴ 30
1
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1
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16k
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Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
4.0 years ago Mozart ▴ 30
2
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4
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4.6k
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tximport, Kallisto and Deseq2 (quick answer)
kallisto tximport deseq2 counts
5.0 years ago • updated 4.1 years ago Mozart ▴ 30
1
vote
6
replies
866
views
Paired t-test with DESeq2
deseq2
updated 4.5 years ago by ★ 1.3k • written 4.5 years ago by ▴ 30
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1
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866
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Comment: C: Paired t-test with DESeq2
4.5 years ago Mozart ▴ 30
0
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0
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866
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Comment: C: Paired t-test with DESeq2
4.5 years ago Mozart ▴ 30
1
vote
1
reply
952
views
inferential replicates in Kallisto when summarising values via tximport
tximport
updated 4.9 years ago by 41k • written 4.9 years ago by ▴ 30
0
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0
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16k
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Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
4.9 years ago Mozart ▴ 30
0
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1
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16k
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Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
4.9 years ago Mozart ▴ 30
0
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2
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16k
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Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
4.9 years ago Mozart ▴ 30
0
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0
replies
16k
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Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
4.9 years ago Mozart ▴ 30
10
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18
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16k
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Batch Effect in DESeq2, how to control, how to remove it, how to address biological question
deseq2 batch effect batch
4.9 years ago Mozart ▴ 30
2
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1
reply
761
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Multiple groups and two methods to analyse them with DESeq2
deseq2
updated 4.9 years ago by 41k • written 4.9 years ago by ▴ 30
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1
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2.2k
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Comment: C: Principal components in DESeq2
4.9 years ago Mozart ▴ 30
0
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1
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2.2k
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Comment: C: Principal components in DESeq2
4.9 years ago Mozart ▴ 30
5
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5
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2.2k
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Principal components in DESeq2
deseq2
4.9 years ago Mozart ▴ 30
0
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0
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16k
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Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
4.9 years ago Mozart ▴ 30
0
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1
reply
16k
views
Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
4.9 years ago Mozart ▴ 30
0
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0
replies
16k
views
Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
4.9 years ago Mozart ▴ 30
0
votes
1
reply
16k
views
Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
4.9 years ago Mozart ▴ 30
0
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0
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1.9k
views
Comment: C: adapter trimming paired vs unpaired reads
4.9 years ago Mozart ▴ 30
3
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1
reply
1.7k
views
Tximport and pseudo alignment with Kallisto
kallisto tximport deseq2
updated 4.9 years ago by 41k • written 4.9 years ago by ▴ 30
0
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1
reply
766
views
DESeq2, how to deal with batch effect: t-test or design matrix?
deseq2 batch sva t-test design matrix
updated 5.0 years ago by 41k • written 5.0 years ago by ▴ 30
1
vote
2
replies
1.9k
views
adapter trimming paired vs unpaired reads
rna seq trimmomatic trimming adapter trimming paired analysis
5.0 years ago Mozart ▴ 30
1
vote
0
replies
4.6k
views
Comment: C: tximport, Kallisto and Deseq2 (quick answer)
5.0 years ago Mozart ▴ 30
0
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1
reply
4.6k
views
Comment: C: tximport, Kallisto and Deseq2 (quick answer)
5.0 years ago Mozart ▴ 30
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