User: Ruichao.Zeng

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Posts by Ruichao.Zeng

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Comment: C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
... Apology for my poor description. Specifically, I try to apply annotatePeak function from ChIPseeker package to call peaks. Then, this function requires a TxDb argument that should be exactly TxDb object. Apparently, the TxDb.Hsapiens.UCSC.hg38.knownGene meets this. However, due to I just have a smal ...
written 4 months ago by Ruichao.Zeng0
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Comment: C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
... For example, I have a target genes list, so I only want to construct a subset of TxDb for those target genes list rather than apply the entire TxDb.Hsapiens.UCSC.hg38.knownGene for the following analysis. Specifically, filtering the target genes corresponding information from TxDb.Hsapiens.UCSC.hg3 ...
written 4 months ago by Ruichao.Zeng0
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How to construct a subset of TxDb object from TxDb.Hsapiens.UCSC.hg38.knownGene and selected genes
... Hi all, I just wish to construct a subset of TxDb object based on the TxDb.Hsapiens.UCSC.hg38.knownGene and my special genes. Thus, does anyone know how to do it? Many thanks ...

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