User: maisapinheiro12

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Posts by maisapinheiro12

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Answer: A: Help creating VRange object
... Thank you so much! It worked with unlist(vcfRange$ALT) ...
written 4 months ago by maisapinheiro120
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Comment: C: Help creating VRange object
... Thank you so much. It worked with unlist(vcfRange$ALT) ...
written 4 months ago by maisapinheiro120
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Comment: C: Help creating VRange object
... Thank you so much. It worked with unlist(vcfRange$ALT) ...
written 4 months ago by maisapinheiro120
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Comment: C: Help creating VRange object
... Yeas... I had noticed that. There is a list instead of a vector in the ALT allele, but I didn't know why exactly. I'll try to extract this as a vector using only the first one. Thanks ...
written 4 months ago by maisapinheiro120
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Help creating VRange object
... Hello, I am trying to run SomaticSignatures package but I can't get the input file (a VRange object) right. In the examples given by their vignette is this: ``` >sca_vr = VRanges( seqnames = seqnames(sca_data), ranges = ranges(sca_data), ref = sca_data$Reference_Allele, alt = sca_data$ ...
somaticsignatures vcf vrange written 4 months ago by maisapinheiro120 • updated 4 months ago by Julian Gehring1.3k

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