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Posts by sarah.whiteley
Comment: C: How to subset data
... Hi, thanks so much for your suggestion. I tried the following (trying to assess DGE between 28 and 36 for stage 3 samples only) >dds$stage <-factor(paste0(dds$s3, dds$"28", dds$"36")) >design(dds)<- ~ s3 >dds3 <- DESeq(dds) >resultsNames(dds3) >results(dds3, contrast=c("s3", ...
... Hi there, I am having trouble figuring out how to subset my data to look at gene expression within particular groups. I have 38 samples with two factors - temperature with 2 levels (28 and 36), and stage with 3 levels (s1, s2, and s3). While I can readily contrast within each factor res <- resu ...
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