User: Moosa

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Moosa0
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Posts by Moosa

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Comment: C: rma summarization error when normalizing using oligo and brainarray cdf
... Dear Guido I appreciate your informative response and great help. It was just amazing and comprehensive. : ) best regards ...
written 3 months ago by Moosa0
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Comment: C: rma summarization error when normalizing using oligo and brainarray cdf
... Seem valid. I've also read your explanations about target parameters in Biostar ([for example][1]). `target="probeset"` also yields the same error. So, if I just execute `rma` without any arguments, in that case, the result should be a normalized dataset summarized based on gene levels? Am I correct ...
written 3 months ago by Moosa0
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rma summarization error when normalizing using oligo and brainarray cdf
... Hello. I'm trying to read some raw (.cel) files generated from Affymetrix U133 Plus 2.0 Array using Brainarray custom CDFs. The code that I'm using are: install.packages("http://mbni.org/customcdf/23.0.0/entrezg.download/pd.hgu133plus2.hs.entrezg_23.0.0.tar.gz", repos = NULL, type = "source") ...
oligo brainarray mbni written 3 months ago by Moosa0
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Comment: C: Can't create STRINGdb v11 object using STRINGdb packages methods
... Dear Damian. I appreciate your great help and informative answers. your API is truly amazing. My sincere thanks and respect to you again for your kind answers here and for the great effort you have put into STRINGdb. best regard. :) ...
written 4 months ago by Moosa0
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Comment: C: Can't create STRINGdb v11 object using STRINGdb packages methods
... Dear Damian, Thank you for your help, I'm sorry to bother you with my novice questions, can I [download][1] and parse the Interaction data and another required file manually, and then load it into a `STRINGdb` object for further analysis? [1]: https://string-db.org/cgi/download.pl ...
written 4 months ago by Moosa0
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Can't create STRINGdb v11 object using STRINGdb packages methods
... Hello. when I try to create a `STRINGdb object`, using the following code: > library(STRINGdb) > string_db = STRINGdb$new(version = "11", species=9606, score_threshold=700, input_directory="stringdbdata/") I get this error: ERROR: The version 11 is not valid. Please use o ...
stringdb written 4 months ago by Moosa0

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