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Posts by chadnewton
... I have run ATAC-seq on 4 samples (2 groups with 2 samples each) and I am wanting to differential peak calling between groups but I noticed that when I generate a report of my analysis with dba.report() two of the samples have the exact same count values across all peaks (6.61 for both c1s and c3r). ...
... I am attempting to perform differential peak analysis from ATAC-seq data using DiffBind package and am running into problems with the dba.count function. I have 2 conditions (rapid vs slow) with 3 samples each for a total of 6 samples. I want to create a consensus peakset for both rapid and slow co ...
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