User: chadnewton

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chadnewton0
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Posts by chadnewton

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diffbind counts as same values
... I have run ATAC-seq on 4 samples (2 groups with 2 samples each) and I am wanting to differential peak calling between groups but I noticed that when I generate a report of my analysis with dba.report() two of the samples have the exact same count values across all peaks (6.61 for both c1s and c3r). ...
diffbind dba.report dba.count written 8 weeks ago by chadnewton0 • updated 6 weeks ago by Rory Stark2.9k
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DiffBind dba.count error pv$merge(bed): attempt to apply non-function
... I am attempting to perform differential peak analysis from ATAC-seq data using DiffBind package and am running into problems with the dba.count function. I have 2 conditions (rapid vs slow) with 3 samples each for a total of 6 samples. I want to create a consensus peakset for both rapid and slow co ...
diffbind written 5 months ago by chadnewton0 • updated 12 weeks ago by Rory Stark2.9k

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