User: Matt Mulé

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Matt Mulé0
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Posts by Matt Mulé

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Comment: C: single cell data: adding random effects for subject with multilevel experiment d
... Hi Aaron, thanks very much for your reply. I would like to clarify one misunderstanding I had about the de testing ecosystem in bioconductor to help other users: In order to use limma with count data, one can create a DGElist object from the edgeR package, which uses limma as a dependency. You can ...
written 5 months ago by Matt Mulé0
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single cell data: adding random effects for subject with multilevel experiment design
... Hi, wondering if anyone has thought about the best way to do single cell DE testing including subject as a random effect in a multilevel design including many subjects contrasting timpoint and disease state effects within a single "cluster" For example, consider data similar to the design in the Li ...
limma scran simplesinglecell singlecellexperiment written 5 months ago by Matt Mulé0 • updated 5 months ago by Aaron Lun25k

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