User: chaitra.sathyaprakash

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Posts by chaitra.sathyaprakash

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[DESeq2] sequin [ANAQUIN] correction, too many factors in model
... Hello, I have an RNA seq dataset obtained from mRNA ribosomal pulldown (TRAP) from a mutated and control cell line. I also have input samples for each of these. Due to the nature of TRAP, these samples are strongly enriched in mRNA, and the inputs are similar to bulk RNA sequencing, with a more com ...
deseq2 ruvseq anaquin sequins written 5 months ago by chaitra.sathyaprakash0 • updated 5 months ago by Michael Love26k
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Comment: C: Error: row names supplied are of the wrong length in RUVSeq
... I am having a similar problem with my data. Is RUVseq able to deal with replicates with unequal numbers across the sample groups? ...
written 5 months ago by chaitra.sathyaprakash0
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Comment: C: DESeq2 baseMean values for each sample
... Is it similarly possible to extract other columns from the DESeq2 results table, such as log fold change for each replicated sample? ...
written 5 months ago by chaitra.sathyaprakash0

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