User: waterincan

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waterincan0
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Posts by waterincan

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Comment: C: no vignettes directory error during BiocCheck checking [SOLVED]
... Hi shepherl thank u very much. I was running bioccheck on the package path where it was installed (path given by .libPath) . I wasnt running it on the package where I was coding. I misunderstood the tutorial. Thank you very much ...
written 11 days ago by waterincan0
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Comment: C: no vignettes directory error during BiocCheck checking [SOLVED]
... Hi shepherl thank u very much. I was running bioccheck on the package path where it was installed (path given by .libPath) . I wasnt running it on the package where I was coding. I misunderstood the tutorial. Thank you very much ...
written 11 days ago by waterincan0
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Comment: C: no vignettes directory error during BiocCheck checking
... Thank you very much for your reply shepherl. sessionInfo() R version 3.6.0 (2019-04-26) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Debian GNU/Linux 9 (stretch) Matrix products: default BLAS: /usr/lib/libblas/libblas.so.3.7.0 LAPACK: /usr/lib/lapack/libl ...
written 12 days ago by waterincan0
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Answer: A: no vignettes directory error during BiocCheck checking
... tree ``` . ├── DESCRIPTION ├── devtools_history.R ├── inst │   └── app │   ├── server.R │   └── ui.R ├── man │   ├── masanDataInput.Rd │   ├── masanData.Rd │   ├── masanUI.Rd │   └── shiny_app.Rd ├── masan.Rproj ├── NAMESPACE ├── R │   ├── mod_ui_inputs.R │   └── shiny_app.R └── vignettes ...
written 12 days ago by waterincan0 • updated 12 days ago by shepherl ♦♦ 1.4k
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Comment: C: no vignettes directory error during BiocCheck checking
... tree . ├── DESCRIPTION ├── devtools_history.R ├── inst │   └── app │   ├── server.R │   └── ui.R ├── man │   ├── masanDataInput.Rd │   ├── masanData.Rd │   ├── masanUI.Rd │   └── shiny_app.Rd ├── masan.Rproj ├── NAMESPACE ├── R ...
written 12 days ago by waterincan0
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Comment: C: no vignettes directory error during BiocCheck checking
... for system(path_to_package) it says sh: 1: /home/apple/R/x86_64-pc-linux-gnu-library/3.6/masan: Permission denied which is strange as it's in my home directory.. ...
written 12 days ago by waterincan0
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Comment: C: no vignettes directory error during BiocCheck checking
... Hi Martin, Thank you very much for your reply. my Sys.info() gives me this Sys.info() sysname release "Linux" "4.9.0-9-amd64" ...
written 12 days ago by waterincan0 • updated 12 days ago by Martin Morgan ♦♦ 23k
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no vignettes directory error during BiocCheck checking [SOLVED]
... Dear all, I'm trying to create a package and I have used `usethis::use_vignette("my_vignette")` to add a vignette. Unfortunately when I run the command `BiocCheck(path_to_pkg)` i have an error message stating: [1] "No 'vignettes' directory." although I indeed have a vignettes created by use_v ...
bioccheck written 12 days ago by waterincan0

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