User: João Pimenta

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Posts by João Pimenta

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Comment: C: [DeSeq2] Developmental timeline across seasons with non-independent sampling
... Hi Michael, Thank you very much for your response. I still have some questions regarding the matrix resulting from the experimental design (mostly due to my lack of knowledge in statistics). The resultsNames output looked like so: > resultsNames(dds) [1] "Intercept" "Season_S_vs_F" " ...
written 20 days ago by João Pimenta0
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Comment: A: [DeSeq2] Developmental timeline across seasons with non-independent sampling
... Dear Michael, Yes, those samples belong to the same individual. In fact, this was a simplified example of our dataset. We have some additional individuals that we would like to add to this dataset, which were not sampled for all stages and/or were sampled only for one season. Nevertheless, we cou ...
written 26 days ago by João Pimenta0
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[DeSeq2] Developmental timeline across seasons with non-independent sampling
... Dear all, I have an experiment addressing gene expression differences during different stages of developmental time line (stage Early, Mid and Late) across two consecutive seasons (Fall and Spring). Each sample of the timeline was taken for the same individual, for a total of 4 individuals for all ...
deseq2 written 26 days ago by João Pimenta0

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