User: 2002ymx02

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2002ymx020
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Posts by 2002ymx02

<prev • 6 results • page 1 of 1 • next >
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Comment: C: The meaning of interaction terms in design matrix in edgeR User's Guide on page
... Many thank, Gordon. Yes, they are the same. ...
written 2 days ago by 2002ymx020
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Comment: C: The meaning of interaction terms in design matrix in edgeR User's Guide on page
... Thank you for your time, Gordon. Actually, my understanding of interaction terms [5] "TreatDrug:Time1h", [6] "TreatDrug:Time2h" are (Drug.1h-placbo.1h)-(Drug.0h-placebo.0h) and (Drug.2h-placbo.2h)-(Drug.0h-placebo.0h) respectively, which are different from the definition on page 36 of the Guide: D ...
written 4 days ago by 2002ymx020
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The meaning of interaction terms in design matrix in edgeR User's Guide on page 38
... Hi Prof. Gordon Smyth, I have a question about the meaning of interaction terms in design matrix on the page 38 in the edgeR User's Guide. In line 19, the guide say: "The last two coefficients give the DrugvsPlacebo.1h and DrugvsPlacebo.2h contrasts". But my understanding is that the last two coe ...
edger written 4 days ago by 2002ymx020 • updated 4 days ago by Gordon Smyth38k
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Comment: C: Is the colnames of model.matrix on the page 34 in edgeR User's Guide?
... Thank you Prof. Gordon for your reply. ...
written 7 days ago by 2002ymx020
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Comment: C: Is the colnames of model.matrix on the page 34 in edgeR User's Guide?
... Thank you for your edgeR and imma. Here is another typo: it shoud be CvsA=C-A, not CvsA=A-C in the last second line on page 31. And it could be better to say: .....genes that are always "significant" in red cells, not always "higher" in last line 6 on page 32, because for DE analysis, the first r ...
written 7 days ago by 2002ymx020
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Is the colnames of model.matrix on the page 34 in edgeR User's Guide?
... Hi Gordon Smyth and other authors of edgeR, It seemed that the colnames of design2 on page 34 in edgeR User's Guide were wrong. They should be (intercept), groupA and groupB, not (intercept), groupB and groupC, because groupC was releveled as reference. Could you check this? Best, Mingxing Yang ...
edger written 8 days ago by 2002ymx020 • updated 7 days ago by Gordon Smyth38k

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