User: Benjamin

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Benjamin0
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Posts by Benjamin

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Comment: C: tximport::summarizeToGene fails to ignoreTxVersion
... Thank you, Michael. I didn't know about the `tximeta::addIds()` function. A minor point with regards to this solution: Given, I've run a `DESeq2` analysis on `gse` (or `txm`) and I would like to add the ENTREZID afterwards, the `addIds(dds_results, "ENTREZID")` function will not work with an obje ...
written 5 months ago by Benjamin0
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tximport::summarizeToGene fails to ignoreTxVersion
... Using `airway2` (https://github.com/mikelove/airway2/tree/master/inst) salmon transcript level count files, this is supposed to remove the versioning of Ensemble gene IDs: library(tximeta) srrs = list.files(path = "~/Downloads/airway2-master/inst/extdata/quants/", full.names = TRUE) ...
annotationdbi tximport tximeta written 5 months ago by Benjamin0

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