User: helenlong1

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helenlong10
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Posts by helenlong1

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Comment: C: Meaning of NA in geneSim result using GOSemSim
... Thank you for your reply. I have edited my post to include the code I used to generate the example table. When GoSemSim returns NA does this mean that one or both genes have no GO terms? Does GoSemSim exclude IEA? ...
written 12 weeks ago by helenlong10
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Meaning of NA in geneSim result using GOSemSim
... I have used geneSim to do a pairwise comparison between between 5 genes (using Jiang and BMA). I have also done this using another package called Dnet (using their equivalent of Jiang and BMA). The results are: | Gene1 __|Gene2__ | dnetjiang __| gosemjiang | |-------- |-------- |--- ...
gosemsim dnet written 12 weeks ago by helenlong10
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Using GoSemSim with other Ontologies
... I would like to calculate Semantic similarity between pairs of genes in the mammalian phenotype ontology. Is it possible to use the functions in this package with other ontologies. Or does anyone know of any other packages which have this functionality. Thank you! ...
gosemsim written 3 months ago by helenlong10 • updated 3 months ago by Lluís Revilla Sancho510

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