User: antgomo
antgomo • 0
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Posts by antgomo
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... Many thanks Aaron,
so i will use
design <- model.matrix(~pd$RESP*cell_comp+ pd$Sex + pd$Age)
without splines, in this case, i will have to look individually for each pd$RESP:pd$XXX individually, isn't it?
if i want to check the effect of cell_comp in DE genes between R and NR, i have to ...
written 7 days ago by
antgomo • 0
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... I am using limma to find the cell composition effect on response against treatment
my phenodata is as follows
...
Code RESP Age SEX CD8T CD4T NK Bcell Mono Neu
30105 R 39 F 0.08900827 0.10813018 0.04065231 0.03384039 0.08240881 0.6639053
...
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