User: Elena.M

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Elena.M0
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Posts by Elena.M

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Comment: C: CustomProDB InputVcf() - Issue getting the GRanges INDEL object from VCF file
... ´´´ > sessionInfo() R version 3.6.0 (2019-04-26) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Sierra 10.12.6 Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Fra ...
written 5 weeks ago by Elena.M0
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CustomProDB InputVcf() - Issue getting the GRanges INDEL object from VCF file
... Hello, I am trying to use the package *CustomProDB* to retrieve the mutated peptides from a VCF file. When I use *InputVcf()*, the *GRanges* object does not include the INDEL column that I need for making the index and use *Varlocation()*. I have generated the VCF file using *GATK HaplotypeCaller*. ...
vcf customprodb gatk snv inputvcf written 5 weeks ago by Elena.M0

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