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Posts by prodhan82
... Species: *Oryza sativa* Study: Identification of QTL for a particular trait I have a set of 3000 SNP markers across the rice genome. I want to reduce this set to 300 SNP markers. Queries: i. What are the criteria that I should apply to filter out the markers? ii. Are there any R packages to do it? ...
... Two queries: i. What is the package in Bioconductor where the position of a SNP can be specified to get its flanking sequences? ii. What is the way to highlight or put brackets around a nucleotide at a specific position in a DNA String Set? Thanks in advance. Prodhan ...
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