User: dewshrs

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dewshrs0
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Posts by dewshrs

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Comment: C: diffBind: differentially bound sites are highly different between using EDGER an
... Thank you for your reply, incase of EDGER, using `bFullLibrarySize = TRUE/FALSE ` doesn't make much difference and MA plot is almost same, but when using DeSeq2, when `bFullLibrarySize = TRUE` the negative fold change is highly increased and hence around 8000, but if changed to `FALSE`, the number i ...
written 3 months ago by dewshrs0
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diffBind: differentially bound sites are highly different between using EDGER and DESEQ2
... Hi, Using DESEQ2 and EDGER in diffBind gives huge difference in total number of differentially bound sites around 8000 for DESEQ2 and around 700 for EDGER, reading the vignette, the number should be fairly similar. And also do we need to use "**DBA_SCORE_TMM_READS_FULL**" in **dba.count** if I am se ...
diffbind written 3 months ago by dewshrs0 • updated 3 months ago by Rory Stark2.9k

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