User: lim6432

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lim64320
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Posts by lim6432

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Why NanoStringDiff package so slow?
... Hello I am studying NanoString data analysis. I'm trying to do a DEG analysis using the NanoStringDiff package, but the glm.LRT function is too slow. Why is that? Please let me know. Is there another DEG tool for NanoString data that I would recommend for you? ...
nanostring de analysis nanostringdiff ncounter written 9 weeks ago by lim64320
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Comment: C: Can NanoString data be analyzed using DESeq2?
... Thank you for your reply. I have a question for your saying. Is it a process for data normalization to calculate using controlGenes in DESeq2?(You could also specify the endogenous housekeeping as controlGenes in DESeq2.) I have heard that the process of normalization of the NanoString is fixed, ...
written 11 weeks ago by lim64320
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Can NanoString data be analyzed using DESeq2?
... Hello, I am trying to analyze differential expressed genes using NanoString data. There are a number of tools that deal with RNA-seq data, but Nanostring data is not well documented. Since Nanostring data is also a gene count data, I think it is possible to analyze using RNA-seq tool. Is it possibl ...
deseq2 nanostring differential expressed genes analysis written 11 weeks ago by lim64320 • updated 11 weeks ago by Michael Love25k

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