User: qq809825706

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Comment: C: could the result of DEseq2 by LRT be used in SPIA directly?
... thank you for your reply. I'm doing a Time course analyses (2 treatment and 5 time point) with LRT refer to [Hypothesis testing: Likelihood ratio test (LRT)](https://github.com/hbctraining/DGE_workshop/blob/master/lessons/08_DGE_LRT.md). but it mention: > even though there are fold changes prese ...
written 15 days ago by qq8098257060
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could the result of DEseq2 by LRT be used in SPIA directly?
... the LRT in DEseq2 make the similar format results to wald test, but log2FoldChange has another mean which I can't understand. so I wonder if the result of DEseq2 by LRT could be used in SPIA or GSEA directly. If not, how to apply it with SPIA or GSEA? could anyone help me? thank you. ...
deseq2 written 20 days ago by qq8098257060 • updated 20 days ago by Michael Love24k

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