User: caranlove

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Posts by caranlove

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Comment: C: tximport Error in attr(x, "names") <- as.character(value) : 'names' attribute
... Thank you so much Michael! For some reason it appears R did not like the way I was calling up my .sf files. I have tried pulling them in the way you had success with and it worked for me as well! Thanks again for all of your time and help. Cheers! ...
written 10 weeks ago by caranlove0
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Comment: C: tximport Error in attr(x, "names") <- as.character(value) : 'names' attribute
... Thanks! I've emailed your gmail when you get a chance. Best ~C ...
written 10 weeks ago by caranlove0
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Comment: C: tximport Error in attr(x, "names") <- as.character(value) : 'names' attribute
... Hmm, I tried running with only the first 3 samples and get the same error. > txi <- tximport(files, type="salmon", tx2gene=tx2gene) reading in files with read_tsv 1 2 3 Error in attr(x, "names") <- as.character(value) : 'names' attribute [2] must be the same length ...
written 10 weeks ago by caranlove0
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Comment: C: tximport Error in attr(x, "names") <- as.character(value) : 'names' attribute
... Sure thing! The Salmon script I used was: salmon index -t GCF_000002285.3_CanFam3.1_rna.fa -i GW_salmon_index2 salmon quant -i /scratch/clove/canids/Reference/Salmon/GW_salmon_index2 -l A -1 G1_L001_R1.fastq G1_L002_R1.fastq G1_L003_R1.fastq G1_L004_R1.fastq -2 G1_L001_R2.fastq G1_L002_ ...
written 10 weeks ago by caranlove0
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Comment: C: tximport Error in attr(x, "names") <- as.character(value) : 'names' attribute
... Thank you for the reply! The names(files) is the name of each of my samples and looks like: [1] "G1" "G2" "G3" "G4" "G5" "G6" "G7" "G110" "G111" "G117" "G118" "G119" "G130" Thanks! ...
written 10 weeks ago by caranlove0
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tximport Error in attr(x, "names") <- as.character(value) : 'names' attribute [2] must be the same length as the vector [1]
... Hello all, I am currently having issues importing quantification data for DESeq2 using the `library(tximport)` package and tximport function. The method I am using to take my Salmon alignments through this process includes the below commands: ``` txdb <- makeTxDbFromGFF("GCF_000002285.3_CanFam3. ...
rnaseq software error R tximport written 10 weeks ago by caranlove0 • updated 10 weeks ago by Michael Love25k

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