User: amin.ghareyazi

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Posts by amin.ghareyazi

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Comment: C: DESeq2 multiple group comparison (ANOVA) with batch effect
... Thanks for your fast and precise reply Michael. Do you mean that differences are statistically significant but they are not observable in these plots? and the results are well adjusted for batch effect? I can't see differences in plotCounts for groups (third plot) but there are observable difference ...
written 12 weeks ago by amin.ghareyazi0
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DESeq2 multiple group comparison (ANOVA) with batch effect
... Hi I'm using DESeq2 to analyze raw read counts. I have 5 groups and 3 batches (different projects). In order to find out which genes are expressed differentially in all groups and also adjust for batch effects I conducted the LRT test step by step from the guideline. This is my code: rna.o=DESeqDa ...
deseq2 anova batch effect deg comparison written 12 weeks ago by amin.ghareyazi0 • updated 12 weeks ago by Michael Love26k

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