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Posts by ctstackh
Comment: C: edgeR DGEList and design matrix
... keep <- filterByExpr(x) x <- x[keep,] solved the issue! I'm still not sure what my design should be: treat+group, group+treat, group*treat, group:treat? I want to compare treated and untreated within groups, but I also want to compare all treated vs all untreated. Would I use et for these c ...
... I'm new to edgeR and trying to perform differential expression for my samples, but having difficulties getting started. I have 8 pairs of samples most with 3 replicates each (1 replicate each from 2 groups had to be thrown out because they didn't pass QC). So in general, each pair consists of 3 con ...
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