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Posts by Meghdad
Comment: C: lfcShrink in DESeq2
... Dear Michael, Thanks a lot for your reply. I tried with type="ashr", and as can be seen in [FigureE], the lfc of genes X and Y are preserved. : https://photos.app.goo.gl/UyNX8C58G4jjraQ2A ...
... Dear all, I am new to RNA seq data analysis. I have been trying to do some DE analysis using DESeq2. I am comparing two conditions, and I expect two genes X and Y to differ in these conditions. When I put condition 1 as reference, the MA plot looks as figure A, and when I do lfcShrink using apeglm, ...
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