User: Ana Conesa

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Ana Conesa340
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Posts by Ana Conesa

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SeqAhead Workshop on High Performance Computing for NGS data analysis
... Dear colleague, We are happy to announce the up coming workshop on High Performance Computing for NGS data analysis, organized by the SeqAhead COST action in collaboration with the Prince Felipe Research Centre. The workshop will present most recent advances on the use of HPC to solve different as ...
written 7.5 years ago by Ana Conesa340
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[limma] Separate Channel Analysis of 2 color data with summarization
... Dear List, I am analyzing some yeast Nimblegen arrays following the separate channel analysis of 2 color data of the limma package. After within and between arrays normalization steps I did a summarization (medianpolish of M and A values for 12 spots/gene) step to reduce the number of features for ...
normalization yeast limma written 9.2 years ago by Ana Conesa340
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Comment: C: Error GO.db package "term is not member of any ontology"
... Dear Jim and Vicent, Yes, I guess this is the thing. I was wondering if there was a more up-to-date GO.db package... If case you find it interesting, I found around 200 terms not present in the current GO.db... (see attached) Thanks again Ana On Friday 09 April 2010 17:19:25 James W. MacDonal ...
written 9.5 years ago by Ana Conesa340
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Comment: C: Error GO.db package "term is not member of any ontology"
... Thanks Sean for your fast reply This is my sessionInfo() > sessionInfo() R version 2.10.0 (2009-10-26) x86_64-pc-linux-gnu locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8 [7] L ...
written 9.5 years ago by Ana Conesa340
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Error GO.db package "term is not member of any ontology"
... Dear all, I am working with the package GO.db (version 2.3.5) to retrieve information from GO terms and I find a large number of my GO IDs that apparently are not in the database, i.e. I get the following error: Error in getGOParents(x) : GO:0090153 is not a member of any ontology But this term c ...
go written 9.5 years ago by Ana Conesa340 • updated 9.5 years ago by Sean Davis21k
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2 post-doc and one PhD positions at the Bioinformatics and Genomics Department of the Centro de Investigaciones Príncipe Felipe, Valencia, Spain.
... Dear colleague(s), Please find below the announcement of bioinformatics positions at our Department. Please, send it to potentially interested colleagues Thank you in advance Ana Conesa ---------------------------------------------------------------------- ---------------------------------------- ...
sequencing written 9.8 years ago by Ana Conesa340
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Fwd: maSigPro - NA values for coefficient estimates - Is a polynomical fit recommended for my data?
... Dear Jeremy My apologies for the late response. First of all: maSigPro compares profiles. This means that you must have overlapping time points, not necessarily the same time points, but overlapping at least. This means that if you have a group with only one time point, you cannot do much with this ...
annotation limma masigpro a4 written 9.9 years ago by Ana Conesa340 • updated 9.9 years ago by jeremy wilson150
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Answer: A: question about p-values in maSigPro
... Dear Dick I see that your edesign matrix is not well defined. It should be like: Time Replicates Young Old young.0 0 1 1 0 young.8 8 2 1 0 young.16 16 3 1 0 young.20 20 4 1 0 young.32 32 ...
written 10.3 years ago by Ana Conesa340
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Fwd: Re: which package can do GSEA for no model organism
... Hi You can do GSEA with FatiScan (www.babelomics.org) with any annotation file provided by the user. If you do not have the annotation for your non-model species you can generate it yourself with Blast2GO (www.blast2go.org) provided you have sequence data, or try to fetch them from the B2G-FAR (ww ...
annotation go organism assign written 10.3 years ago by Ana Conesa340 • updated 10.3 years ago by Pengcheng Yang40
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Answer: A: maSigPro and EMV no longer available for windows.
... Dear Giulio Yes indeed, we removed the maSigPro dependency on EMV in the last version since this package was no longer available. Please, use this the last maSigPro version and you should have not problems. Regards Ana Conesa > > >---- Mensaje Original ----e >De: hpages at fhcrc.org &g ...
written 10.4 years ago by Ana Conesa340

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