User: jpc41

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jpc4110
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Posts by jpc41

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Comment: C: DESeq2 with multiple treatments but no replicates
... Ok, I suspected this was the case. Thanks for your help. ...
written 3 months ago by jpc4110
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Comment: C: DESeq2 with multiple treatments but no replicates
... I also tried setting `minReplicatesForReplace=Inf` as suggested in one part of the manual, but the error message remains the same. ...
written 3 months ago by jpc4110
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DESeq2 with multiple treatments but no replicates
... Hi everyone, I've been trying to use DESeq2 to look at expression differences across different transcripts, with 8 (unreplicated) samples across 8 treatments. My count data looks as follows: > head(countdata) cts46 cts47 cts48 cts49 cts50 cts51 cts52 cts53 ENST00 ...
deseq2 rna-seq written 3 months ago by jpc4110 • updated 3 months ago by Michael Love26k

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