User: MatthewP

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MatthewP0
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Posts by MatthewP

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Comment: C: DESeq2 lfcShrink warning use ashr method
... Yes yes `apeglm` work. ...
written 5 weeks ago by MatthewP0
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Comment: C: DESeq2 lfcShrink warning use ashr method
... Ok, added to post now. ...
written 5 weeks ago by MatthewP0
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DESeq2 lfcShrink warning use ashr method
... Hello, my `lfcShrink` function gives warning I don't understand, post on biostar [link.][1] ``` > resLFC_sh2 <- lfcShrink(dds, contrast=c("Treatment", "Sh2", "Control"), type="ashr") using 'ashr' for LFC shrinkage. If used in published research, please cite: Stephens, M. (2016) False dis ...
deseq2 written 6 weeks ago by MatthewP0

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