User: Amin Moghaddasi

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Posts by Amin Moghaddasi

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Open PhD Position - Bioinformatics in collaboration with SAP
... The Technische Universit?t M?nchen (TUM) is one of the leading universities in Germany with 31,000 students and 450 Professors across 12 academic departments. Our continuous top performance in research, education and promotion of top talent make the TUM a privileged partner of multiple businesses an ...
proteomics written 7.6 years ago by Amin Moghaddasi130
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limma for spectral counts
... Dear Norman / all, Many thanks for making PLGEM available to the community. It's a very straightforward package to use. I'm using this for spectral counts measured on four conditions. As far as I understand, PLGEM can fit the model to one comparison of interest at a time (Control_vs_condirion1, con ...
limma plgem written 8.2 years ago by Amin Moghaddasi130
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PhD student in Bioinformatics, Computational Biology at Technical University of Munich, Germany
... The Technische Universität München (TUM) is one of the leading universities in Germany with 25,000 students and 400 Professors across 12 academic departments. Our continuous top performance in research, education and promotion of top talent make the TUM a privileged partner of multiple businesses an ...
proteomics pathways written 8.4 years ago by Amin Moghaddasi130
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cannot allocate vector of size 73 kb, in made4
... Dear All, This has been asked several times before in different threads, However this error seems to be a 32bit windows OS memory usage related to R. Although I am using Dual Core Processor with 2GB of RAM running kubuntu Gutsy version 7.10, However I've got the same error "can not allocate vector ...
written 12.1 years ago by Amin Moghaddasi130 • updated 12.1 years ago by Kasper Daniel Hansen6.4k
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Comment: C: Rgraphviz installation problem on " chmod: cannot access '~/library/Rgraphviz/li
... Hi Li, Many thanks for your advises. According to your suggestions, I have modified the --configure-args='--with-graphviz=/usr/lib/graphviz' to look into executables in "/usr" instead, and it did the job. $ R CMD INSTALL Rgraphviz_1.16.0.tar.gz --configure-args='--with-graphviz=/usr' Thanks again ...
written 12.1 years ago by Amin Moghaddasi130
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Comment: C: Rgraphviz installation problem on " chmod: cannot access '~/library/Rgraphviz/li
... Hi Li, The "dot -V" gives the following response for me as well. $ dot -V dot - Graphviz version 2.12 (Tue Sep 4 16:56:48 UTC 2007) $ which dot /usr/bin/dot $ which dotty /usr/bin/dotty $ which neato /usr/bin/neato $ which twopi /usr/bin/twopi I have also took the pkg_conf_path out of the e ...
written 12.1 years ago by Amin Moghaddasi130
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Rgraphviz installation problem on " chmod: cannot access '~/library/Rgraphviz/libs/*': No such file or directory"
... Dear Li, Dear All, Many thanks for all your suggestions, I have upgraded the R to 2.6 and tried to install the latest version of Rgraphviz but the problem still exist and I don't know if it is actually related to bioconductor or grphviz?? So any advise is appreciated. I have installed : R version ...
rgraphviz written 12.1 years ago by Amin Moghaddasi130 • updated 12.1 years ago by Li.Long@isb-sib.ch510
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automating makeContrasts call in limma
... Hi list, I am trying to call makeContrasts() in limma to accept character vector of all samples vs control. But it seems that makeContrasts() consider only the first element in the contrast vector. Basically what I've done is first to assign design matrix "dMatrix", then make a contrast character ...
limma assign written 12.1 years ago by Amin Moghaddasi130
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Comment: C: Rgraphviz installation problem on " chmod: cannot access '~/library/Rgraphviz/li
... Dear Tony, Thanks for your quick reply, here is my sessioninfo : > sessionInfo() R version 2.4.1 (2006-12-18) i686-pc-linux-gnu locale: LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US .UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US. UTF-8;LC_NAME=C; ...
written 12.2 years ago by Amin Moghaddasi130
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Rgraphviz installation problem on " chmod: cannot access '~/library/Rgraphviz/libs/*': No such file or directory"
... Dear All, I have some problem installing Rgraphgviz on my system with the following specification. My system is Suse 9.2 , i386 GNU/Linux I have installed graphviz-2.14.1 from source I have gcc version 3.3.4 (pre 3.3.5 20040809) I also set the LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib/graphv ...
rgraphviz written 12.2 years ago by Amin Moghaddasi130 • updated 12.2 years ago by Kasper Daniel Hansen6.4k

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