User: dagarfield

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Posts by dagarfield

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Comment: C: Using edgeR or DESeq2 to analyze allele-specific expression?
... That makes perfect sense. Thanks! Do you have a suggestion for what it might look like to layer yet another level of data on top of it? [e.g. add temperature variation]. ...
written 3 months ago by dagarfield0
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Comment: C: Using edgeR or DESeq2 to analyze allele-specific expression?
... This thread is likely dead by now, by would be curious to hear more about "compare them to each other to determine if there's a time/ASE interaction". How would you propose that would work? Why not something like (if I get the syntax correct): design = model.matrix(~0+individual:time+allele + allel ...
written 3 months ago by dagarfield0

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