User: sara.blocquiaux

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Posts by sara.blocquiaux

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Bioconductor SVA: two variables of interest
... Dear Bioconductor list & Jeff Leek, I am using the sva function in the SVA package to estimate surrogate variables in my methylation data (EPIC beadchip, Illumina). The main goal is to define the effect of time & group (and their interaction) on methylation. I was wondering how to incorpora ...
sva written 7 days ago by sara.blocquiaux0 • updated 6 days ago by James W. MacDonald51k
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Combining pfilter (wateRmelon) and preprocessNoob (minfi)
... Dear all, I want to combine the packages minfi and wateRmelon to analyse my EPIC methylation data. I loaded my data as an RGChannelSetExtended into R with Minfi. Next I wanted to filter out low quality samples and probes with the pfilter function of wateRmelon. Downside: the function returns a Met ...
minfi watermelon methylation pfilter preprocessnoob written 19 days ago by sara.blocquiaux0 • updated 18 days ago by tgorri10

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