User: carol white

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carol white680
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European Union
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4 years, 5 months ago
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12 years, 6 months ago
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Posts by carol white

<prev • 72 results • page 2 of 8 • next >
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selection of probes, probesets mapping to the same gene
... Hi, Apart from genefilter, is there any other packages that find all probes, probesets mappign to the same gene and then, select the one based on criterion for ex largest value of the test statistic? Look forward to your reply, Carol [[alternative HTML version deleted]] ...
genefilter written 5.4 years ago by carol white680 • updated 5.4 years ago by Wolfgang Huber13k
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blast nt seq vs protein seq
... Hi, Is there any function, package that could be used to blastx nucleotide sequences against protein sequences? It should use exclusively the blast program. Thanks, Carol [[alternative HTML version deleted]] ...
written 5.4 years ago by carol white680 • updated 5.4 years ago by Dario Strbenac1.5k
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mismatch nb in Biostrings
... Hi, How does it work with mismatch.min, mismatch.max in the functions of Biostrings for ex, vcountPattern? If mismatch.min=0, mismatch.max=2, then if there is no match, the function searches up to 2 matches, that is, if it find matches with 1mismatch, then it searches in the pattern in the next subj ...
written 5.4 years ago by carol white680 • updated 5.4 years ago by Harris A. Jaffee590
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carol white
... lvqv http://attelonsnous.fr/jqtxigse/RNDCHR,3,15%/jknaxvtuguls/vbjhl/a nrpzdffyv.htm urzl [[alternative HTML version deleted]] ...
written 6.5 years ago by carol white680
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Comment: C: number of sequence from readfastq
... I get 109811 Thank you very much for all replies, ________________________________ From: Steve Lianoglou Cc: "bioconductor@stat.math.ethz.ch" Sent: Wednesday, April 10, 2013 11:08 AM Subject: Re: [BioC] number of sequence from readfastq Hi, Hi, >Is it normal not to have the same numb ...
written 6.7 years ago by carol white680
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number of sequence from readfastq
... Hi, Is it normal not to have the same number of sequences in the fastq file and the object generated from readfastq? grep @ SRR062641.filt.fastq | wc -l 187786   data <- readFastq("SRR062641.filt.fastq") summary(data)     Length      Class       Mode     109811 ShortReadQ         S4 Thanks, ...
written 6.7 years ago by carol white680 • updated 6.7 years ago by Steve Lianoglou12k
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Comment: C: bioc package installation problem
... Thanks Dan. I have Ubuntu. which one should I install?  sudo apt-get install libxml2-dev libcurl-dev Reading package lists... Done Building dependency tree Reading state information... Done Package libcurl-dev is a virtual package provided by:   libcurl4-openssl-dev 7.22.0-3ubuntu4   libcurl4-nss ...
written 6.7 years ago by carol white680
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bioc package installation problem
... Hi, I can't install ShortRead package. Is it because biocLite doesn't install automatically the dependencies and I have to install them before ShortRead? Best, Carol ---------------------------------------------------------------------- ---- source("http://bioconductor.org/biocLite.R") BiocInst ...
shortread biocinstaller written 6.7 years ago by carol white680 • updated 6.7 years ago by Dan Tenenbaum8.2k
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bioc data set not found
... Hi, It might be a simple question but how is it possible to load a bioc data set like colonCA? As a user, I installed Biobase, BiocInstaller and colonCA in my environment. Then, when I load Biobase (library Biobase) and colonCA (data colonCA), I get the following message Warning message: In data(co ...
biobase written 6.9 years ago by carol white680 • updated 6.9 years ago by James W. MacDonald52k
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Fw: download GSE data with GEOquery - Ignore this message
... kindly  Ignore this message ----- Forwarded Message ----- From: carol white To: "bioconductor@stat.math.ethz.ch" Sent: Sunday, November 18, 2012 8:28 PM Subject: download GSE data with GEOquery Hi, I have downloaded GSE data with GEOquery and dowloaded both geno and phenotype data. But I got an ...
geoquery written 7.1 years ago by carol white680

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