User: acs1990

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acs199010
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Posts by acs1990

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Comment: C: is our edgeR code doing what we think it does?
... Thank you for your help on this. I am in the process of addressing this with my team and making sure we are doing it right. To clarify, you should log transform the CPM for visualization only and not for analysis and only use the raw counts for analysis steps like the exactTest and QLFtest? It i ...
written 6 weeks ago by acs199010
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Comment: C: is our edgeR code doing what we think it does?
... Thank you for your feedback, I appreciate you taking the time to review this. You have absolutely confirmed my worst fears and it's super helpful. I feel better since you confirmed some of what I noticed too and I am working on overhauling our workflow to adhere to the documentation. ...
written 10 weeks ago by acs199010
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Comment: C: is our edgeR code doing what we think it does?
... Thank you so much. I really appreciate how detailed and clear the documentation is, especially the case studies. Even as an R noob I have been able to follow it very easily and the QL approach was the conclusion I came to as well. I am in the process of overhauling our workflow so that it more close ...
written 10 weeks ago by acs199010
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is our edgeR code doing what we think it does?
... Thanks in advance for any help someone more experienced with edgeR and DE analysis can offer. I am new in a lab doing this kind of work and I have only been working in R for about a month. My team tells me this code performs differential expression analysis of two groups via a t-test and edgeR's E ...
edger differential expression rna-seq written 11 weeks ago by acs199010 • updated 10 weeks ago by Yunshun Chen540

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