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Posts by gideon.e
... Figured this out...use the output matrix of -log10(Pvalues). Make sure the matrix is oriented the same way that is observed in the RRHO map, then extract the matrix x and y coordinates of the highest intensity point. These will correspond to the rankings from the two gene sets being compared. Then s ...
... I'm using the RRHO package to compare ranked gene sets. The associated publication mentions that "the highest intensity point on the [RRHO] map can be used to extract the most statistically significant overlapping gene set", but there is no information on how this is accomplished. How exactly can th ...
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