User: Jonathan.allen

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Posts by Jonathan.allen

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Comment: C: DeSeq2 Design (A-B)-(C-D)
... Thanks a lot, this seems to work well! ...
written 5 weeks ago by Jonathan.allen10
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Comment: C: DeSeq2 Design (A-B)-(C-D)
... Yes, that would be the goal. ...
written 5 weeks ago by Jonathan.allen10
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Comment: C: DeSeq2 Design (A-B)-(C-D)
... An Example would be helpful. I'm still having trouble modeling this. My Data looks like so: Name | Experiment_Groups Sample_1 | A Sample_2 | A Sample_3 | A Sample_4 | B Sample_5 | B Sample_6 | B Sample_7 | C Sample_8 | C Sample_9 | C Sample_10 | D Sample_11 | D Sample_1 ...
written 5 weeks ago by Jonathan.allen10
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DeSeq2 Design (A-B)-(C-D)
... Hi everyone, I'm hoping for some help modeling an RNA-Seq analysis in DeSeq2. I have 4 populations (A,B,C,D) , and initially I used the following to compare them each to one another: >dds <- DESeqDataSetFromMatrix(countData = countData, colData = colData, design = ~ Experiment_Groups) > ...
limma deseq2 written 5 weeks ago by Jonathan.allen10 • updated 5 weeks ago by Gordon Smyth39k

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