User: shen_

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Answer: C: DiffBind with paired-end ChIP-seq data
... I solved this by setting "minOverlap = 1". ``` data$config$singleEnd <- F data <- dba.count(data,minOverlap=1,bUseSummarizeOverlaps=T) ``` ...
written 4 weeks ago by shen_0 • updated 4 weeks ago by James W. MacDonald51k
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DiffBind with paired-end ChIP-seq data
... I tried to count reads around peak set based on paired-end ChIP-seq data. But I don't want to get a consensus peak set. So I add "peaks=NULL" according to the document of DiffBind. Here is my code: ``` > data$config$singleEnd <- F > data <- dba.count(data,peaks=NULL,bUseSummarizeOverla ...
software error written 4 weeks ago by shen_0 • updated 4 weeks ago by James W. MacDonald51k

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