User: me5537

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me553710
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Posts by me5537

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Comment: C: failure importing data with tximport with error information
... Thank you very much…… I asked the administrator to help me update the bioc to 3.10, but he refused for the reason that not all the R packages can be used in Bioc 3.10 the administrator told me that the reason why I suddenly couldn't use the tximport is that the server is named NFS, they depose soft ...
written 4 weeks ago by me553710
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Comment: C: failure importing data with tximport with error information
... actually, I have tried both "abundance.h5" and "abundance.tsv" files using tximport but it gave the same ERROR information^ ...
written 4 weeks ago by me553710
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Comment: C: failure importing data with tximport with error information
... I have tried reinstalled rhdf5 2.3.0, it still doesn't work and I try to read dataset by tximport using the following code files <- file.path(path,loadname, "abundance.tsv") names(files) <- loadname txi.kallisto <- tximport(files, type = "kallisto", tx2gene = ...
written 4 weeks ago by me553710
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Comment: C: failure importing data with tximport with error information
... I check the packages as follows:but it seems that it won't affect the dataset reading? > BiocManager::valid() * sessionInfo() R version 3.6.1 (2019-07-05) Platform: x86_64-conda_cos6-linux-gnu (64-bit) Running under: Ubuntu 16.04.6 LTS Matrix products: default BLAS/LAPA ...
written 4 weeks ago by me553710
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failure importing data with tximport with error information
... hello, I am new to bioinformatics and Galaxy, so maybe my question is kind of naive. I’m reading RNAseq count data generated from kallito using tximport: humandb<- EnsDb.Hsapiens.v75 tran.human<- transcripts(humandb, return.type = “DataFrame”) tran.human<- tran.human[, c(“tx_id ...
software error hdf5 tximport written 5 weeks ago by me553710 • updated 5 weeks ago by Michael Love26k

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