User: valeria.difilippo1

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Posts by valeria.difilippo1

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Comment: C: crlmm support for Illumina arrays with no annotation package?
... Apologies for the delay in replying and thank you so much for your help! I think that the problem is the format of manifest file. How it should be? Thank you. Kindly, Valeria ...
written 18 days ago by valeria.difilippo10
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Comment: C: crlmm support for Illumina arrays with no annotation package?
... Oh sorry, I misunderstood. Here's the output you requested (I hope): >debug(crlmm:::getNumberOfCores()) debugging in: crlmm:::getNumberOfCores() debug: { defaultCores = min(detectCores(), 8) return(getOption("krlmm.cores", defaultCores)) } Browse[2]> defau ...
written 23 days ago by valeria.difilippo10
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Comment: C: crlmm support for Illumina arrays with no annotation package?
... This is the result and what the get0ption call returns > debug(crlmm:::getNumberOfCores) > genotype.Illumina(sampleSheet=NULL, arrayNames=NULL, arrayInfoColNames=NULL, path = datadir, call.method = "krlmm", cdfName="nopackage", anno = mod1, genome = "hg19", batch=NULL, saveDate = TRUE ...
written 24 days ago by valeria.difilippo10
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Comment: C: crlmm support for Illumina arrays with no annotation package?
... Thank you for your help. Kindly, Valeria ...
written 25 days ago by valeria.difilippo10
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Comment: C: crlmm support for Illumina arrays with no annotation package?
... How can I fix the problem? ...
written 25 days ago by valeria.difilippo10
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Comment: C: crlmm support for Illumina arrays with no annotation package?
... This is what I see: > parallel::makeCluster function (spec, type = getClusterOption("type"), ...) { switch(type, PSOCK = makePSOCKcluster(names = spec, ...), FORK = makeForkCluster(nnodes = spec, ...), SOCK = snow::makeSOCKcluster(names = spe ...
written 25 days ago by valeria.difilippo10
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Comment: C: crlmm support for Illumina arrays with no annotation package?
... > library(crlmm) > crlmm:::getNumberOfCores() [1] 2 ...
written 28 days ago by valeria.difilippo10
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Comment: C: crlmm support for Illumina arrays with no annotation package?
... Now works, but I've other warning message: > genotype.Illumina(sampleSheet=NULL, arrayNames=NULL, arrayInfoColNames=NULL, path = datadir, call.method = "krlmm", cdfName="nopackage", anno = mod1, genome = "hg19", batch=NULL, saveDate = TRUE) Instantiate CNSet container. Initializing ...
written 28 days ago by valeria.difilippo10
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Comment: C: crlmm support for Illumina arrays with no annotation package?
... Hello! I'm trying to use crlmm in the same way and the algorithm throws me the same error. Did you find any solution? Thanks, Valeria ...
written 29 days ago by valeria.difilippo10

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