User: cafosspot

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Comment: C: DESeq2 - VST eliminates zero values
... Poor choice of words, I meant that samples with higher counts are still higher after the transformation. I was not visualizing what was happening with the lower counts using the VST correctly. This helps a lot. Thanks very much, Michael. ...
written 28 days ago by cafosspot0
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DESeq2 - VST eliminates zero values
... Greetings, I have been following the DESeq2 vignette to analyze a large number of RNA-seq samples. sizeFactors are relatively comparable for each sample. While investigating the various data transformations for visualization purposes, I found the VST (setting blind=false) more effective than usin ...
deseq2 written 28 days ago by cafosspot0 • updated 28 days ago by Michael Love26k

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