User: emilie.derisoud

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Posts by emilie.derisoud

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Comment: C: DESeq2 resultsname problem
... I actually have a lot of missing values in my LC-MS/MS data which are represented by the value 0. The value 0 is not clear : maybe the compound is not present or maybe it is not detected by the spectrometer. I will do more research about it and SAMseq model. Thank you again Emilie ...
written 15 days ago by emilie.derisoud • 0
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Comment: C: DESeq2 resultsname problem
... Thank you a lot for your answer. I did not know about scaling and centering of covariates. I am wondering about something I found this week. I also have metabolomic, lipidomic and proteomic data which gives similar count datasets to those obtained with the RNAseq. I found a paper which compare dif ...
written 15 days ago by emilie.derisoud • 0
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Comment: C: DESeq2 resultsname problem
... Thnak you for your answer ! I just quit R and re-run. I didn't change my code. The name is the same again. Yes I have a message about the numeric covariate but it is just saying that it would be preferable to transform it into a factor. As I can't do that, I am still using a numeric covariate. C ...
written 22 days ago by emilie.derisoud • 0
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DESeq2 resultsname problem
... Dear all I am a working with DESeq2 (version 1.22.2) on R (version 3.5.3) to analyze my data from RNA sequencing. I did some tests last week and I had no trouble but this week, for the real analysis, I have a problem. Coldata table looks like : ``` > target_OMvsYM label condition taille ...
deseq2 written 23 days ago by emilie.derisoud • 0 • updated 23 days ago by Michael Love ♦ 26k

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