User: d.ricken

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d.ricken0
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Posts by d.ricken

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Comment: C: edgeR lable shuffling permutation test
... Thank you for your helpful suggestions! Do you have anything in mind how I could test it better, whether my GO analysis is just noise? ...
written 21 days ago by d.ricken0
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Comment: C: edgeR lable shuffling permutation test
... Thanks for your fast answer! When doing my analysis I make contrasts in a subset of my samples (3-10 samples per group). Therefore, it still makes sense to use GLM, right? ...
written 21 days ago by d.ricken0
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edgeR lable shuffling permutation test
... Dear all, I am analyzing RNAseq data, using the edgeR package 3.26.8 (in R 3.6.1). In total I have several hundred samples (cell lines) to which I assigns labels, based on some secondary data. I then test for differential gene expression using the following pipeline: ``` count_list <- DGEList( ...
edger written 22 days ago by d.ricken0 • updated 21 days ago by Gordon Smyth39k

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