User: Janet Young

gravatar for Janet Young
Janet Young730
Reputation:
730
Status:
Trusted
Location:
Fred Hutchinson Cancer Research Center, Seattle, WA, USA
Website:
http://research.fhcrc....
Scholar ID:
Google Scholar Page
Last seen:
1 month, 3 weeks ago
Joined:
12 years ago
Email:
j******@fhcrc.org

I provide bioinformatics support to members of Harmit Malik's lab. We work on a number of evolutionary questions using diverse tools.

Posts by Janet Young

<prev • 115 results • page 2 of 12 • next >
0
votes
3
answers
425
views
3
answers
Answer: A: integer overflow in ChIPpeakAnno assignChromosomeRegion
... Thanks, Jianhong - I appreciate it ...
written 19 months ago by Janet Young730
0
votes
3
answers
425
views
3
answers
integer overflow in ChIPpeakAnno assignChromosomeRegion
... Hi there, I'm just starting to explore the ChIPpeakAnno package - it looks really useful: thank you for creating it.  I'm following some of the vignettes and using assignChromosomeRegion to get a first glimpse of where our peaks tend to map: that works well.   What I'd love to do is to see how diff ...
chippeakanno assignchromosomeregion written 19 months ago by Janet Young730 • updated 19 months ago by Julie Zhu4.0k
0
votes
1
answer
352
views
1
answer
binnedaverage - is it possible to add an na.rm option?
... Hi there, I'm using binnedAverage, and would love to see an na.rm option added if possible. I do have a hacked version of binnedAverage that I can use instead, but thought I'd suggest adding na.rm as an enhancement for the existing function.   My motivation is that I have a set of SNP genotype fre ...
genomicranges written 2.4 years ago by Janet Young730 • updated 2.3 years ago by Hervé Pagès ♦♦ 14k
0
votes
5
answers
1.9k
views
5
answers
Answer: A: gviz: controlling track labels
... Thanks again - that is fairly close.   I have enough samples (2 groups, 4 samples each) that it'd look better to mimic the horizon type multipanel grouped plot rather than than the overlaid histograms.  I can get something pretty close to what I want just by plotting coverage as separate individual ...
written 3.1 years ago by Janet Young730
0
votes
5
answers
1.9k
views
5
answers
Answer: A: gviz: controlling track labels
... Thanks again, Florian - that's helpful.   Here's a suggestion for a future enhancement: would it be easy for you to implement a plot type for DataTrack that mimics the coverage track for AlignmentTrack plots?  I love the look of the filled gray polygon, rather than the simple line-only plot that ty ...
written 3.1 years ago by Janet Young730
0
votes
5
answers
1.9k
views
5
answers
Answer: A: gviz: controlling track labels
... Thanks, Florian - that should let me fix it as needed.  Sorry I missed it in the docs. Unfortunately vertical titles are challenging in my actual use case -  I have rather a lot of tracks I want to show, so some of them are very narrow (8 DNA-seq coverage tracks, 2 or more RNA-seq tracks with cover ...
written 3.1 years ago by Janet Young730
0
votes
5
answers
1.9k
views
5
answers
Comment: C: gviz: controlling track labels
... having trouble embedding the image: http://imgur.com/1xHYFWh ...
written 3.1 years ago by Janet Young730
0
votes
5
answers
1.9k
views
5
answers
gviz: controlling track labels
... Hi there, I've just started using gviz - it looks really useful. Thanks for the package! I'm plotting annotations and coverage (from a bam file) and am having trouble to get the labels to show up properly for the coverage tracks. Here's a very simple example that should show what I mean: in this e ...
gviz written 3.1 years ago by Janet Young730
0
votes
2
answers
1.4k
views
2
answers
Answer: A: GenomicRanges bug in follow?
... Thanks all - much appreciated!  That makes more intuitive sense to me now. ...
written 3.9 years ago by Janet Young730
0
votes
2
answers
1.1k
views
2
answers
Comment: C: GRanges - add names when constructing a new GRanges, rather than afterwards?
... Thanks, Malcolm - I'll go with Michael's method, which is easier to understand (I have to admit that the backtick syntax is mysterious to me right now) ...
written 4.0 years ago by Janet Young730

Latest awards to Janet Young

Popular Question 7 weeks ago, created a question with more than 1,000 views. For rtracklayer export: enable trackline for GRanges and RleLists, etc?
Popular Question 17 months ago, created a question with more than 1,000 views. For Rgraphviz installation problem
Popular Question 17 months ago, created a question with more than 1,000 views. For gviz: controlling track labels
Popular Question 17 months ago, created a question with more than 1,000 views. For problem with cbind on GRanges object - new bug?
Popular Question 17 months ago, created a question with more than 1,000 views. For rtracklayer export: enable trackline for GRanges and RleLists, etc?
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Rgraphviz installation problem
Popular Question 2.3 years ago, created a question with more than 1,000 views. For subset a RleList using GRanges object?
Popular Question 2.3 years ago, created a question with more than 1,000 views. For subset a RleList using GRanges object?
Popular Question 2.3 years ago, created a question with more than 1,000 views. For subset a RleList using GRanges object?
Popular Question 3.1 years ago, created a question with more than 1,000 views. For subset a RleList using GRanges object?
Centurion 3.9 years ago, created 100 posts.
Student 4.1 years ago, asked a question with at least 3 up-votes. For tileGenome for overlapping ranges?
Autobiographer 5.0 years ago, has more than 80 characters in the information field of the user's profile.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 175 users visited in the last hour