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0
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0
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407
views
Variant Filtering on very large VCF files
VariantAnnotation
VariantFiltering
6 months ago
Bogdan
▴ 670
0
votes
0
replies
522
views
conversion a VCF file into a MAF file
VCFArray
maftools
7 months ago
Bogdan
▴ 670
0
votes
2
replies
1.3k
views
about baseMean in DEseq2
DESeq2
written 2.7 years ago by
Bogdan
▴ 670
0
votes
1
reply
512
views
BioC packages in cancer genomics
genomics
cancer
updated 12 months ago by
Kevin Blighe
★ 3.9k • written 13 months ago by
Bogdan
▴ 670
0
votes
1
reply
580
views
GRanges list convert into igraph format
GRanges
igraph
updated 14 months ago by
Lluís Revilla Sancho
▴ 730 • written 14 months ago by
Bogdan
▴ 670
0
votes
0
replies
434
views
normFactors or calcNormFactors (computing the normalization or scaling factors)
limma
edgeR
csaw
15 months ago
Bogdan
▴ 670
0
votes
0
replies
440
views
RUVg for SNAP-ChIP ?
RUVSeq
16 months ago
Bogdan
▴ 670
0
votes
1
reply
2.2k
views
Comment:
Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
16 months ago
Bogdan
▴ 670
0
votes
1
reply
2.2k
views
Comment:
Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
16 months ago
Bogdan
▴ 670
0
votes
2
replies
2.2k
views
Comment:
Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
16 months ago
Bogdan
▴ 670
0
votes
0
replies
2.9k
views
Comment:
Comment: Spike-in normalization in EdgeR
16 months ago
Bogdan
▴ 670
0
votes
0
replies
3.6k
views
Comment:
Comment: Using edgeR and a spike-in to calculate absolute abundance
16 months ago
Bogdan
▴ 670
0
votes
1
reply
2.2k
views
Comment:
Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
16 months ago
Bogdan
▴ 670
0
votes
1
reply
2.2k
views
Comment:
Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
16 months ago
Bogdan
▴ 670
0
votes
1
reply
2.2k
views
Comment:
Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
16 months ago
Bogdan
▴ 670
1
vote
12
replies
2.2k
views
normalization of ChIP-seq data by using the spike-ins or by using total library sizes
DESeq2
edgeR
limma
updated 16 months ago by
Michael Love
41k • written 16 months ago by
Bogdan
▴ 670
0
votes
0
replies
2.2k
views
Comment:
Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
16 months ago
Bogdan
▴ 670
0
votes
0
replies
987
views
Comment:
Comment: DiffBind and peak counts as input
17 months ago
Bogdan
▴ 670
2
votes
4
replies
987
views
DiffBind and peak counts as input
DESeq2
edgeR
DiffBind
updated 16 months ago by
Rory Stark
★ 5.1k • written 17 months ago by
Bogdan
▴ 670
0
votes
0
replies
954
views
Comment:
Comment: statistics : edger or DESeq2 to asses the differential binding using the averag
17 months ago
Bogdan
▴ 670
0
votes
1
reply
954
views
Comment:
Comment: statistics : edger or DESeq2 to asses the differential binding using the averag
17 months ago
Bogdan
▴ 670
0
votes
1
reply
954
views
Comment:
Comment: statistics : edger or DESeq2 to asses the differential binding using the averag
17 months ago
Bogdan
▴ 670
1
vote
7
replies
954
views
statistics : edger or DESeq2 to asses the differential binding using the average scores
DESeq2
edgeR
updated 15 months ago by
chaco001
• 0 • written 17 months ago by
Bogdan
▴ 670
3
votes
9
replies
1.5k
views
scDblFinder and xgboost
scDblFinder
xgboost
written 23 months ago by
Bogdan
▴ 670
1
vote
0
replies
2.2k
views
Comment:
Comment: installation of BioC packages on Mac M1 Monterrey OS
17 months ago
Bogdan
▴ 670
0
votes
3
replies
1.2k
views
ShortRead Installation in R 4.2.0 and zlib library
R-4
ShortRead
17 months ago
Bogdan
▴ 670
0
votes
0
replies
1.2k
views
Comment:
Comment: ShortRead Installation in R 4.2.0 and zlib library
17 months ago
Bogdan
▴ 670
0
votes
0
replies
1.4k
views
Answer:
Answer: bigwig to counts
17 months ago • updated 14 months ago
Bogdan
▴ 670
1
vote
1
reply
2.2k
views
installation of BioC packages on Mac M1 Monterrey OS
limma
Bioconductor
edgeR
17 months ago
Bogdan
▴ 670
0
votes
1
reply
1.4k
views
bigwig to counts
DESeq2
edgeR
bigwig
limma
17 months ago • updated 14 months ago
Bogdan
▴ 670
0
votes
2
replies
1.6k
views
converting bedgraph into bigwig
bedgraph
wiggleplotr
bigwig
wig
updated 19 months ago by
complaintguide
• 0 • written 19 months ago by
Bogdan
▴ 670
0
votes
1
reply
1.6k
views
Comment:
Comment: performing the differential binding in ChIP-seq
22 months ago
Bogdan
▴ 670
0
votes
0
replies
1.6k
views
Comment:
Comment: performing the differential binding in ChIP-seq
22 months ago
Bogdan
▴ 670
0
votes
6
replies
1.6k
views
performing the differential binding in ChIP-seq
ChIP-seq
updated 11 months ago by
archibaldmarston
• 0 • written 22 months ago by
Bogdan
▴ 670
0
votes
1
reply
1.1k
views
Comment:
Comment: scDblFinder and amulet
22 months ago
Bogdan
▴ 670
0
votes
1
reply
1.1k
views
Comment:
Comment: scDblFinder and amulet
22 months ago
Bogdan
▴ 670
0
votes
6
replies
1.1k
views
scDblFinder and amulet
scDblFinder
updated 22 months ago by
Pierre-Luc
• 0 • written 23 months ago by
Bogdan
▴ 670
0
votes
1
reply
2.0k
views
Comment:
Comment: reading hdf5 files without hdf5r
23 months ago
Bogdan
▴ 670
3
votes
5
replies
2.0k
views
reading hdf5 files without hdf5r
hdf5r
updated 23 months ago by
Hervé Pagès
16k • written 23 months ago by
Bogdan
▴ 670
0
votes
0
replies
2.0k
views
Comment:
Comment: reading hdf5 files without hdf5r
23 months ago
Bogdan
▴ 670
0
votes
1
reply
483
views
download
BSgenome.Hsapiens.UCSC.hg38
BSgenome.Hsapiens.UCSC.hg38.masked
23 months ago
Bogdan
▴ 670
0
votes
0
replies
483
views
Answer:
Answer: download
23 months ago
Bogdan
▴ 670
0
votes
0
replies
771
views
Comment:
Comment: scATAC-seq median fragments per cell
24 months ago
Bogdan
▴ 670
0
votes
1
reply
771
views
scATAC-seq median fragments per cell
SnapATAC
Signac
ArchR
scATAC-seq
2.0 years ago • updated 24 months ago
Bogdan
▴ 670
1
vote
1
reply
1.1k
views
installing the packages such as BSgenome.Hsapiens.UCSC.hg19
BSgenome.Hsapiens.UCSC.hg19
updated 2.0 years ago by
Hervé Pagès
16k • written 2.0 years ago by
Bogdan
▴ 670
0
votes
1
reply
742
views
peak annotation
ChIPpeakAnno
Annotation
updated 23 months ago by
Kai Hu
▴ 70 • written 2.0 years ago by
Bogdan
▴ 670
1
vote
2
replies
1.3k
views
Gviz and datatracks
Gviz
updated 2.1 years ago by
corinne_hutfilz
• 0 • written 2.2 years ago by
Bogdan
▴ 670
0
votes
1
reply
692
views
meta-gene profiles
ChIP-seq
updated 2.1 years ago by
Guillaume Devailly
▴ 60 • written 2.1 years ago by
Bogdan
▴ 670
0
votes
1
reply
865
views
saving png images and X11
ChipQC
updated 2.1 years ago by
ATpoint
★ 4.0k • written 2.1 years ago by
Bogdan
▴ 670
0
votes
0
replies
846
views
Comment:
Comment: ChIP-seq or CUT&RUN enrichment
2.1 years ago
Bogdan
▴ 670
429 results • Page
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