User: Deanne Taylor

gravatar for Deanne Taylor
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9 years, 9 months ago
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10 years, 9 months ago
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d******@hsph.harvard.edu

Posts by Deanne Taylor

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Answer: A: Hierarchical clustering of RMA data
... Ryan: This might be a naive question as I'm not sure how dChip is doing the normalization, but is there a setting in dChip to let it know it's a log2 scale? Otherwise the mathematics between log and linear scale would be much different... and that might be the source of the difference, as subtracti ...
written 9.8 years ago by Deanne Taylor50
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Answer: A: similarity between two gene lists with varied length
... The made4 package in bioconductor can report gene list similarities. --- Deanne Taylor PhD Executive Director, Bioinformatics Core Department of Biostatistics Harvard School of Public Health 655 Huntington Avenue Boston, MA 02115 dtaylor at hsph.harvard.edu >>> "Weiwei Shi" 08/23/ ...
written 9.8 years ago by Deanne Taylor50
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Is anyone developing an extensible Galaxy-like interface for Bioconductor?
... Dear all: Iis anyone aware of any projects creating an extensible platform that can act as an interface to Bioconductor that could be used to deliver Bioconductor methods to non-command-line-using users? To save some replies: * I am aware of limmaGUI and affylmGUI, but the tcl/tk interface is f ...
affylmgui limmagui written 9.9 years ago by Deanne Taylor50 • updated 9.9 years ago by ilhami visne10
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Comment: C: Question on limma single-channel analysis of dual-channel microarray
... Thanks, Naomi. When I looked at the simple limma analysis of the 3 biological replicates (disease vs normal) the results closely correlated to some immunohistochemistry results we had -- so I tend to believe (even tho a small sample size) the simple limma analysis results on the three biological r ...
written 10.8 years ago by Deanne Taylor50
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Question on limma single-channel analysis of dual-channel microarray
... Hi... I have a few complex analyses I am trying to perform on some older data. I've tried looking through the mailing lists and literature and perhaps what I have here is a difficulty in understanding. So, on to my question... I have 48 microarrays of two-channel Agilent data, no technical replica ...
written 10.8 years ago by Deanne Taylor50 • updated 10.8 years ago by Naomi Altman6.0k

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