User: Yongde Bao

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Yongde Bao170
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5 years, 11 months ago
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16 years, 1 month ago
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y***@virginia.edu

Posts by Yongde Bao

<prev • 17 results • page 1 of 2 • next >
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Rat St gene array 2.0
... Hi All, I wonder if anyone could point to me where to find the axillary files, such as .db, .cdf, .probe etc, for Affy's rat st gene array 2.0. Best, Yongde -- Yongde Bao DNA Sciences Core Dept. of Microbiology, Immunology, and Cancer Biology UVA [[alternative HTML version ...
cancer cdf written 5.9 years ago by Yongde Bao170 • updated 5.9 years ago by Stephen Turner10
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Comment: C: Bioc packages not working with R2.15.2?
... Thanks to all who are helping with this matter. After doing what Dan suggested I am still getting an error: > options("BioC_mirror"="http://www.bioconductor.org") > source("http://bioconductor.org/biocLite.R") > biocLite("RSQLite") BioC_mirror: http://www.bioconductor.org Using Bioconduct ...
written 6.5 years ago by Yongde Bao170
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Bioc packages not working with R2.15.2?
... Hi All, I recently updated my R to 2.15.2 and reloaded the bioc packages. Then I started to have troubles making use of a number of packages, not the least with OLIGO which I have been using frequently before this updating. Can someone in the know lend a helping hand on this. Below is the error mes ...
cancer oligo written 6.5 years ago by Yongde Bao170 • updated 6.5 years ago by Benilton Carvalho4.3k
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huex10stv2cdf
... Hi all, Can someone please let me know where to get the file "huex10stv2cdf"? Thanks, Yongde Bao UVa [[alternative HTML version deleted]] ...
written 7.7 years ago by Yongde Bao170 • updated 7.7 years ago by Dan Tenenbaum8.2k
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help with Starr
... Dear BioConductors, While trying to go over the demo data in the package Starr, I encountered this error message: > dataPath <- system.file("extdata", package = "Starr") > bpmapChr1 <- readBpmap(file.path(dataPath, "Scerevisiae_tlg_chr1.bpmap")) > cels <- c(file.path(dataPath, "R ...
go starr written 8.0 years ago by Yongde Bao170 • updated 8.0 years ago by Martin Morgan ♦♦ 23k
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oligo read celfile
... Dear R-B Experts, I ran into a problem using the oligo package to analyze mgst arrays. It seems the read.celfiles() did not actually read in the new data but instead keeping the old data read in previously. > library(oligo) > library(pd.mogene.1.0.st.v1) > geneCELs <- list.celfiles("/Da ...
go oligo written 8.0 years ago by Yongde Bao170 • updated 8.0 years ago by Benilton Carvalho4.3k
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Comment: C: merged affy 430 A&B
... Hi Jim, Thanks much for sharing your thought. For where I stand, I thought it would be easier to handle in the downstream analysis if chip A and chip B could merge into one set of metadata. At least for comparing that to data from later chip type such as MG430_2. Best, Yongde On Wed, Apr 6, 2011 ...
written 8.1 years ago by Yongde Bao170
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merged affy 430 A&B
... Hi all, I wonder if someone has done this -- merging the A set and B set of Affy Mouse chip 430 into one data set so as to facilitate further analysis such as lima. Some pointers will be appreciated. Thanks Yongde Bao University of Virginia ...
written 8.1 years ago by Yongde Bao170 • updated 8.1 years ago by James W. MacDonald50k
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QC for st gene arrays
... Dear All, I was trying to do a QC report for oligo generated mouse st gene array data, but was met with the errors: > library(affyQCReport) > library(affydata) > geneCore <- rma (affyGeneFS, target="core") Background correcting Normalizing Calculating Expression > featureData(geneCo ...
go oligo written 8.2 years ago by Yongde Bao170 • updated 8.2 years ago by Benilton Carvalho4.3k
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oligo package
... Hi all, A simple question -- is it true that the package oligo works only with R-dev but not the regular R? Thanks, Yongde ...
oligo written 8.2 years ago by Yongde Bao170 • updated 8.2 years ago by Dan Tenenbaum8.2k

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Popular Question 5.9 years ago, created a question with more than 1,000 views. For Bioc packages not working with R2.15.2?

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