User: Florian Hahne

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Florian Hahne540
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Posts by Florian Hahne

<prev • 54 results • page 2 of 6 • next >
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Comment: C: biomaRt - current devel version of biomaRt+RCurl don't work
... Hi Paul, the issue is fixed in the latest RCurl which you can install by source("http://www.bioconductor.org/biocLite.R") biocLite("RCurl") For some reason this didn't pick up the dependency on bitops on my my machine, so to be safe you might want to do biocLite(c("bitops", "RCurl")) Please check ...
written 10.5 years ago by Florian Hahne540
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Comment: C: FlowViz graphics problems
... Anja Schiel wrote: > Dear Deepayan, > > Thanks a lot for your help! I very much appreciate that you take the > time to help me. Bellow some comments and another question, if you have > time..... > > On Wed, 2009-05-20 at 14:13 -0700, Deepayan Sarkar wrote: > >> On Wed, ...
written 10.6 years ago by Florian Hahne540
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Comment: C: Stange message with getOption("device") in OSX
... Hi Gonzalo, how about using dev.new(): 'dev.new' opens a new device. Normally R will open a new device automatically when needed, but this enables you to open further devices in a platform-independent way. (For which device is used see 'getOption("device")'.) Florian On 18.05. ...
written 10.6 years ago by Florian Hahne540
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Comment: C: Upgrading R
... It sure is: writeLines(installed.packages()[,1], con="packages.dump") recompile R packs <- readLines("packages.dump") biocLite(packs) Florian On 11.05.2009, at 07:46, Michal Blazejczyk wrote: > Hi everyone, > > I think an interesting feature in R would be "package list dump" > o ...
written 10.6 years ago by Florian Hahne540
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Comment: C: flowClust results in subset filters
... Hi Kenneth, did you also update your flowClust? I had to add the summarizeFilter method there. The version you need is 2.3.1. When running the last command of the example code I get this names(filterDetails(fr, "tmixFilter in defaultRectangleGate")) [1] "filter" "populations" "expName" ...
written 10.6 years ago by Florian Hahne540
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flowClust results in subset filters
... Hi Bastian, Kenneth, the problem in this case is that flowClust extends the multipleFilterResult class, adding all the mixture parameters and stuff. The subsetFilter operation is defined in flowCore, which doesn't really know about all these additional slots. We do have a mechanism in place to deal ...
cancer flowcore flowclust written 10.6 years ago by Florian Hahne540 • updated 10.6 years ago by Kenneth Lo50
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Answer: A: flowClust results in subset filters
... Hi Bastian, this is indeed a feature which wasn't implemented yet. I fixed the code and everything seems to be working as intended now, but I want to give it some more rigorous testing before submitting. I am planning to push that back into the release branch since it is more of a bug fix than featu ...
written 10.6 years ago by Florian Hahne540
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Answer: A: flow Installation Problems
... Hi John, it seems that you are having a general problem with your TclTk installation on your system. The issue is really the installation of rpanel, which relies on TclTk to be present. rpanel is a dependencies of the feature package, which again is a dependency of flowCore. So in a way the problem ...
written 10.6 years ago by Florian Hahne540
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Comment: C: RGraphviz
... Hi Fraser, I tested this on my linux box and things seemed to work there. Not sure whether there are any unpleasant surprises on the WIndows system or whether the below example is special in any sense and I simply didn't run across this when doing my testing. But since you say that the arrows are me ...
written 10.6 years ago by Florian Hahne540
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Comment: C: PieGlyph - labels do not show
... Hi Fraser, I just added your fix to Rgraphviz. The idea of the user-defined glyph drawing functions is that people can draw whatever they want to, e.g. by extending already available functions, but since the pieGlyph documentation is advertising labels I agree that it should deliver... Thanks for th ...
written 10.7 years ago by Florian Hahne540

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