User: Kishor Tappita

gravatar for Kishor Tappita
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Posts by Kishor Tappita

<prev • 31 results • page 1 of 4 • next >
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miRNA to gene mapping (miRNApath)
... Hi All, I am trying to perform pathway analysis using miRNApath package. I was able to understand the entire flow. But, I am having tough time gettting miRNA to Gene mapping. I got the predictions using "http://www.microrna.org/microrna/getDownloads.do", But the mapping does not exist for my entire ...
mirna mirnapath written 5.3 years ago by Kishor Tappita340
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Comment: C: bypassing firewall - destination ip address
... Thanks again Dan. After bypassing the firewall I was able to install the bioconductor packages with the below commands. options(BioC_mirror="http://master.bioconductor.org") source("http://master.bioconductor.org/biocLite.R") biocLite("package_name") Regards, Kishior On Fri, Feb 14, 2014 at 9:05 ...
written 5.5 years ago by Kishor Tappita340
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Comment: C: bypassing firewall - destination ip address
... Thank you so much Dan. On Fri, Feb 14, 2014 at 9:05 PM, Dan Tenenbaum wrote: > > > ----- Original Message ----- >> From: "Kishor Tappita" >> To: bioconductor at r-project.org >> Sent: Friday, February 14, 2014 4:34:05 AM >> Subject: [BioC] bypassing firewall - des ...
written 5.5 years ago by Kishor Tappita340
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bypassing firewall - destination ip address
... Hi All, I am trying to bypass firewall for Bioconductor URL inorder to be able to install several packages. I need to give the destination IP address for this purpose. But I realized to perform load balancing the ip address is being changed. I got this information by using the "ping" command on win ...
written 5.5 years ago by Kishor Tappita340 • updated 5.5 years ago by Dan Tenenbaum8.2k
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topGO expected value column showing NA
... Dear Bioconductor Users, I am trying to find enriched GO terms using topGO. I am using Weight01 algorithm for finding the enrichment. I get significantly enriched GO Terms but I see an NA value in the expected value column. Below is the code I am using. Please help me with solving the NA issue. s ...
go hgu133plus2 topgo written 6.4 years ago by Kishor Tappita340
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topGO expected values showing NA
... Dear Bioconductor Users, I am trying to find enriched GO terms using topGO. I am using Weight01 algorithm for finding the enrichment. I get significantly enriched GO Terms but I see an NA value in the expected column. Below is the code I am using. Please help me with solving the NA issue. sampleG ...
go hgu133plus2 topgo written 6.4 years ago by Kishor Tappita340
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Flanking TSS region for reverse strand using biomaRt
... Dear Group, I am using biomaRt to retrieve the flanking region from the TSS. I use the below statement for retrieving the 1000 bp upstream region from the TSS for yeast organism. seq=getSequence(id="R0010W",type="ensembl_gene_id",seqType="coding_gen e_flank",upstream=1000,mart = mart); Now my qu ...
yeast organism biomart written 8.7 years ago by Kishor Tappita340 • updated 8.7 years ago by Ania Lorenc10
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rtracklayer interface to GBrowse
... Dear All, Would it be possible to interact with Gbrowse using rtracklayer. If yes , could some one explain me the procedure for creating a plugin inorder to be able to interact with GBrowse. Thank you, Kishor ...
rtracklayer written 8.9 years ago by Kishor Tappita340 • updated 8.9 years ago by Michael Lawrence11k
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R package for analyzing MS/MS spectra
... Dear R Experts, Is there any package for identifying peptides from MS/MS data using R. Any help or pointers in this regard is highly appreciated. Thank you in advance for your help. Regards, Kishor ...
written 9.5 years ago by Kishor Tappita340 • updated 9.5 years ago by Prashantha Hebbar260
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Comment: C: problem with downloading dataset using GEOquery
... Dear Sean, Sorry for the delayed response. I was on leave yesterday. Thank you so much for willing to make the change. Regards, Kishor On Tue, Oct 6, 2009 at 9:04 PM, Sean Davis wrote: > > > On Mon, Oct 5, 2009 at 11:35 AM, Kishor Tappita > wrote: >> Dear Sean, >> >&g ...
written 9.9 years ago by Kishor Tappita340

Latest awards to Kishor Tappita

Popular Question 5.3 years ago, created a question with more than 1,000 views. For error with display of significant nodes using topGO
Popular Question 5.3 years ago, created a question with more than 1,000 views. For error with accessing GEOquery data

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